Publications

ZORA Publication List

Publications

• 2013

  • Journal Article

    • Bluwstein, A., Kumar, N., Léger, K., Traenkle, J., van Oostrum, J., Rehrauer, H., Baudis, M., & Hottiger, M. O. (2013). PKC signaling prevents irradiation-induced apoptosis of primary human fibroblasts Cell Death and Disease, 4, e498. https://doi.org/10.1038/cddis.2013.15

• 2012

  • Journal Article

    • Kumar, N., Cai, H., von Mering, C., & Baudis, M. (2012). Specific Genomic Regions Are Differentially Affected by Copy Number Alterations across Distinct Cancer Types, in Aggregated Cytogenetic Data PLoS ONE, 7, e43689. https://doi.org/10.1371/journal.pone.0043689
    • Eggermann, T., Spengler, S., Venghaus, A., Denecke, B., Zerres, K., Baudis, M., & Ensenauer, R. (2012). 2p21 Deletions in hypotonia-cystinuria syndrome European Journal of Medical Genetics, 55, 561–563. https://doi.org/10.1016/j.ejmg.2012.06.008
    • von Bueren, A. O., Gerss, J., Hagel, C., Cai, H., Remke, M., Hasselblatt, M., Feuerstein, B. G., Pernet, S., Delattre, O., Korshunov, A., Rutkowski, S., Pfister, S. M., & Baudis, M. (2012). DNA copy number alterations in central primitive neuroectodermal tumors and tumors of the pineal region: an international individual patient data meta-analysis Journal of Neuro-Oncology, 109, 415–423. https://doi.org/10.1007/s11060-012-0911-7
    • Cai, H., Kumar, N., & Baudis, M. (2012). arrayMap: A Reference Resource for Genomic Copy Number Imbalances in Human Malignancies PLoS ONE, 7, e36944. https://doi.org/10.1371/journal.pone.0036944
    • Wernstedt, A., Valtorta, E., Armelao, F., Togni, R., Girlando, S., Baudis, M., Heinimann, K., Messiaen, L., Staehli, N., Zschocke, J., Marra, G., & Wimmer, K. (2012). Improved multiplex ligation-dependent probe amplification analysis identifies a deleterious PMS2 allele generated by recombination with crossover between PMS2 and PMS2CL Genes, Chromosomes and Cancer, 51, 819–831. https://doi.org/10.1002/gcc.21966
    • Luebke, A. M., Baudis, M., Matthaei, H., Vashist, Y. K., Verde, P. E., Hosch, S. B., Erbersdobler, A., Klein, C. A., Izbicki, J. R., Knoefel, W. T., & Stoecklein, N. H. (2012). Losses at chromosome 4q are associated with poor survival in operable ductal pancreatic adenocarcinoma Pancreatology, 12, 16–22. https://doi.org/10.1016/j.pan.2011.11.001
    • Baudis, M., Giefing, M., Cai, H., Kumar, N., Vater, I., Richter, J., & Siebert, R. (2012). Array-basierter Nachweis chromosomaler Aberrationen bei malignen Neoplasien Medizinische Genetik, 24, 114–122. https://doi.org/10.1007/s11825-012-0328-x
    • Spengler, S., Begemann, M., Ortiz Brüchle, N., Baudis, M., Denecke, B., Kroisel, P. M., Oehl-Jaschkowitz, B., Schulze, B., Raabe-Meyer, G., Spaich, C., Blümel, P., Jauch, A., Moog, U., Zerres, K., & Eggermann, T. (2012). Molecular Karyotyping as a relevant diagnostic tool in children with growth retardation with Silver-Russell features Journal of Pediatrics, 161, 933-942.e1. https://doi.org/10.1016/j.jpeds.2012.04.045
    • Beleut, M., Zimmermann, P., Baudis, M., Bruni, N., Bühlmann, P., Laule, O., Luu, V.-D., Gruissem, W., Schraml, P., & Moch, H. (2012). Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome BMC Cancer, 12, 310. https://doi.org/10.1186/1471-2407-12-310

• 2011

  • Journal Article

    • Begemann, M., Spengler, S., Kanber, D., Haake, A., Baudis, M., Leisten, I., Binder, G., Markus, S., Rupprecht, T., Segerer, H., Fricke-Otto, S., Mühlenberg, R., Siebert, R., Buiting, K., & Eggermann, T. (2011). Silver-Russell patients showing a broad range of ICR1 and ICR2 hypomethylation in different tissues Clinical Genetics, 80, 83–88. https://doi.org/10.1111/j.1399-0004.2010.01514.x

• 2010

  • Journal Article

    • Eggermann, T., Schönherr, N., Spengler, S., Jäger, S., Denecke, B., Binder, G., & Baudis, M. (2010). Identification of a 21q22 duplication in a Silver-Russell syndrome patient further narrows down the Down syndrome critical region American Journal of Medical Genetics. Part A, 152A, 356–359. https://doi.org/10.1002/ajmg.a.33217
    • Eggermann, T., Spengler, S., Bachmann, N., Baudis, M., Mau-Holzmann, U. A., Singer, S., & Rossier, E. (2010). Chromosome 11p15 duplication in Silver-Russell syndrome due to a maternally inherited translocation t(11;15) American Journal of Medical Genetics. Part A, 152A, 1484–1487. https://doi.org/10.1002/ajmg.a.33398
    • Spengler, S., Schönherr, N., Binder, G., Wollmann, H., Fricke-Otto, S., Mühlenberg, R., Denecke, B., Baudis, M., & Eggermann, T. (2010). Submicroscopic chromosomal imbalances in idiopathic Silver-Russell syndrome (SRS): the SRS phenotype overlaps with the 12q14 microdeletion syndrome Journal of Medical Genetics, 47, 356–360. https://doi.org/10.1136/jmg.2009.070052
    • Lacunza, E., Baudis, M., Colussi, A. G., Segal-Eiras, A., Croce, M. V., & Abba, M. C. (2010). MUC1 oncogene amplification correlates with protein overexpression in invasive breast carcinoma cells Cancer Genetics and Cytogenetics, 201, 102–110. https://doi.org/10.1016/j.cancergencyto.2010.05.015
    • Peralta, R., Baudis, M., Vazquez, G., Juárez, S., Ortiz, R., Decanini, H., Hernandez, D., Gallegos, F., Valdivia, A., Piña, P., & Salcedo, M. (2010). Increased expression of cellular retinol-binding protein 1 in laryngeal squamous cell carcinoma Journal of Cancer Research and Clinical Oncology, 136, 931–938. https://doi.org/10.1007/s00432-009-0735-9

• 2009

  • Journal Article

    • Liu, J., Bandyopadhyay, N., Ranka, S., Baudis, M., & Kahveci, T. (2009). Inferring progression models for CGH data Bioinformatics, 25, 2208–2215. https://doi.org/10.1093/bioinformatics/btp365
    • Boerma, E. G., Siebert, R., Kluin, P. M., & Baudis, M. (2009). Translocations involving 8q24 in Burkitt lymphoma and other malignant lymphomas: a historical review of cytogenetics in the light of todays knowledge Leukemia, 23, 225–234. https://doi.org/10.1038/leu.2008.281
    • Bug, S., Dürig, J., Oyen, F., Klein-Hitpass, L., Martin-Subero, J. I., Harder, L., Baudis, M., Arnold, N., Kordes, U., Dührsen, U., Schneppenheim, R., & Siebert, R. (2009). Recurrent loss, but lack of mutations, of the SMARCB1 tumor suppressor gene in T-cell prolymphocytic leukemia with TCL1A-TCRAD juxtaposition Cancer Genetics and Cytogenetics, 192, 44–47. https://doi.org/10.1016/j.cancergencyto.2009.03.001
    • Gerstung, M., Baudis, M., Moch, H., & Beerenwinkel, N. (2009). Quantifying cancer progression with conjunctive Bayesian networks Bioinformatics, 25, 2809–2815. https://doi.org/10.1093/bioinformatics/btp505

• 2008

  • Journal Article

    • Roos, A., Elbracht, M., Baudis, M., Senderek, J., Schönherr, N., Eggermann, T., & Schüler, H. M. (2008). A 10.7 Mb interstitial deletion of 13q21 without phenotypic effect defines a further non-pathogenic euchromatic variant. American Journal of Medical Genetics. Part A, 146A, 2417–2420. https://doi.org/10.1002/ajmg.a.32465
    • Hoischen, A., Ehrler, M., Fassunke, J., Simon, M., Baudis, M., Landwehr, C., Radlwimmer, B., Lichter, P., Schramm, J., Becker, A. J., & Weber, R. G. (2008). Comprehensive characterization of genomic aberrations in gangliogliomas by CGH, array-based CGH and interphase FISH Brain Pathology, 18, 326–337. https://doi.org/10.1111/j.1750-3639.2008.00122.x
    • Bauer, V. L., Braselmann, H., Henke, M., Mattern, D., Walch, A., Unger, K., Baudis, M., Lassmann, S., Huber, R., Wienberg, J., Werner, M., & Zitzelsberger, H. F. (2008). Chromosomal changes characterize head and neck cancer with poor prognosis Journal of Molecular Medicine, 86, 1353–1365. https://doi.org/10.1007/s00109-008-0397-0
    • Nieländer, I., Martín-Subero, J. I., Wagner, F., Baudis, M., Gesk, S., Harder, L., Hasenclever, D., Klapper, W., Kreuz, M., Pott, C., Martinez-Climent, J. A., Dreyling, M., Arnold, N., & Siebert, R. (2008). Recurrent loss of the Y chromosome and homozygous deletions within the pseudoautosomal region 1: association with male predominance in mantle cell lymphoma Haematologica, 93, 949–950. https://doi.org/10.3324/haematol.12656

• 2007

  • Journal Article

    • Baudis, M. (2007). Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data BMC Cancer, 7, 226. https://doi.org/10.1186/1471-2407-7-226
    • Dürig, J., Bug, S., Klein-Hitpass, L., Boes, T., Jöns, T., Martin-Subero, J. I., Harder, L., Baudis, M., Dührsen, U., & Siebert, R. (2007). Combined single nucleotide polymorphism-based genomic mapping and global gene expression profiling identifies novel chromosomal imbalances, mechanisms and candidate genes important in the pathogenesis of T-cell prolymphocytic leukemia with inv(14)(q11q32) Leukemia, 21, 2153–2163. https://doi.org/10.1038/sj.leu.2404877

• 2006

  • Journal Article

    • Baudis, M., Prima, V., Tung, Y. H., & Hunger, S. P. (2006). ABCB1 over-expression and drug-efflux in acute lymphoblastic leukemia cell lines with t(17;19) and E2A-HLF expression Pediatric Blood & Cancer, 47, 757–764. https://doi.org/10.1002/pbc.20635
    • Baudis, M. (2006). Online database and bioinformatics toolbox to support data mining in cancer cytogenetics BioTechniques, 40, 269–272. https://doi.org/10.2144/000112102
    • Liu, J., Mohammed, J., Carter, J., Ranka, S., Kahveci, T., & Baudis, M. (2006). Distance-based clustering of CGH data Bioinformatics, 22, 1971–1978. https://doi.org/10.1093/bioinformatics/btl185

• 2005

  • Journal Article

    • Vandesompele, J., Baudis, M., De Preter, K., Van Roy, N., Ambros, P., Bown, N., Brinkschmidt, C., Christiansen, H., Combaret, V., Lastowska, M., Nicholson, J., O’Meara, A., Plantaz, D., Stallings, R., Brichard, B., Van den Broecke, C., De Bie, S., De Paepe, A., Laureys, G., & Speleman, F. (2005). Unequivocal delineation of clinicogenetic subgroups and development of a new model for improved outcome prediction in neuroblastoma Journal of Clinical Oncology, 23, 2280–2299. https://doi.org/10.1200/JCO.2005.06.104
    • Mao, X., Hamoudi, R. A., Zhao, P., & Baudis, M. (2005). Genetic losses in breast cancer: toward an integrated molecular cytogenetic map Cancer Genetics and Cytogenetics, 160, 141–151. https://doi.org/10.1016/j.cancergencyto.2004.12.018
    • Hidalgo, A., Baudis, M., Petersen, I., Arreola, H., Piña, P., Vázquez-Ortiz, G., Hernández, D., González, J., Lazos, M., López, R., Pérez, C., García, J., Vázquez, K., Alatorre, B., & Salcedo, M. (2005). Microarray comparative genomic hybridization detection of chromosomal imbalances in uterine cervix carcinoma BMC Cancer, 5, 77. https://doi.org/10.1186/1471-2407-5-77

• 2002

  • Journal Article

    • Kaiser, U., Uebelacker, I., Abel, U., Birkmann, J., Trümper, L., Schmalenberg, H., Karakas, T., Metzner, B., Hossfeld, D. K., Bischoff, H. G., Franke, A., Reiser, M., Müller, P., Mantovani, L., Grundeis, M., Rothmann, F., von Seydewitz, C. U., Mesters, R. M., Steinhauer, E. U., … Havemann, K. (2002). Randomized study to evaluate the use of high-dose therapy as part of primary treatment for “aggressive” lymphoma. Journal of Clinical Oncology, 20, 4413–4419. https://doi.org/10.1200/JCO.2002.07.075

• 2001

  • Journal Article

    • Baudis, M., & Cleary, M. L. (2001). Progenetix.net: an online repository for molecular cytogenetic aberration data Bioinformatics, 17, 1228–1229. https://doi.org/10.1093/bioinformatics/17.12.1228
    • Bentz, M., Barth, T. F., Brüderlein, S., Bock, D., Schwerer, M. J., Baudis, M., Joos, S., Viardot, A., Feller, A. C., Müller-Hermelink, H. K., Lichter, P., Döhner, H., & Möller, P. (2001). Gain of chromosome arm 9p is characteristic of primary mediastinal B-cell lymphoma (MBL): comprehensive molecular cytogenetic analysis and presentation of a novel MBL cell line Genes, Chromosomes and Cancer, 30, 393–401. https://doi.org/10.1002/1098-2264(2001)9999:9999<::AID-GCC1105>3.0.CO;2-I
    • Wessendorf, S., Lichter, P., Schwänen, C., Fritz, B., Baudis, M., Walenta, K., Kloess, M., Döhner, H., & Bentz, M. (2001). Potential of chromosomal and matrix-based comparative genomic hybridization for molecular diagnostics in lymphomas Annals of Hematology, 80, B35–B37.

  • Book Section

    • Baudis, M., & Bentz, M. (2001). Comparative Genomic Hybridization for the Analysis of Leukemias and Lymphomas In G. B. Faguet (Ed.), Hematologic Malignancies Methods and Techniques (pp. 43–64). Springer. https://doi.org/10.1385/1-59259-074-8:43

• 2000

  • Journal Article

    • Bentz, M., Plesch, A., Bullinger, L., Stilgenbauer, S., Ott, G., Konrad Müller-Hermelink, H., Baudis, M., Barth, T. F. E., Möller, P., Lichter, P., & Döhner, H. (2000). t(11;14)-positive mantle cell lymphomas exhibit complex karyotypes and share similarities with B-cell chronic lymphocytic leukemia Genes, Chromosomes and Cancer, 27, 285–294. https://doi.org/10.1002/(SICI)1098-2264(200003)27:3<285::AID-GCC9>3.0.CO;2-M

• 1997

  • Journal Article

    • Weber, R. G., Boström, J., Wolter, M., Baudis, M., Collins, V. P., Reifenberger, G., & Lichter, P. (1997). Analysis of genomic alterations in benign, atypical, and anaplastic meningiomas: toward a genetic model of meningioma progression. Proceedings of the National Academy of Sciences of the United States of America, 94, 14719–14724. https://doi.org/10.1073/pnas.94.26.14719
    • Werner, C. A., Döhner, H., Joos, S., Trümper, L. H., Baudis, M., Barth, T. F., Ott, G., Möller, P., Lichter, P., & Bentz, M. (1997). High-level DNA amplifications are common genetic aberrations in B-cell neoplasms American Journal of Pathology, 151, 335–342.

• 1996

  • Journal Article

    • Bentz, M., Bergerheim, U. S. R., Li, C., Joos, S., Werner, C. A., Baudis, M., Gnarra, J., Merino, M. J., Zbar, B., Linehan, W. M., & Lichter, P. (1996). Chromosome imbalances in papillary renal cell carcinoma and first cytogenetic data of familial cases analyzed by comparative genomic hybridization Cytogenetics and Cell Genetics, 75, 17–21. https://doi.org/10.1159/000134448

• 1995

  • Journal Article

    • Bentz, M., Döhner, H., Werner, C. A., Huck, K., Baudis, M., Joos, S., Schlegelberger, B., Trümper, L. H., Feller, A. C., & Pfreundschuh, M. (1995). Identification of genetic imbalances in malignant lymphoma using comparative genomic hybridization Stem Cells, 13, 83–87. https://doi.org/10.1002/stem.5530130713

Pagination