Publications

ZORA Publication List

Publications

• 2025

  • Journal Article

    • Yusifov, E., Schaettin, M., Dumoulin, A., Bachmann-Gagescu, R., & Stoeckli, E. T. (2025). The primary cilium gene CPLANE1 is required for peripheral nervous system development Developmental Biology, 519, 106–121. https://doi.org/10.1016/j.ydbio.2024.12.008

• 2024

  • Journal Article

    • Noble, A. R., Masek, M., Hofmann, C., Cuoco, A., Rusterholz, T. D. S., Özkoc, H., Greter, N. R., Phelps, I. G., Vladimirov, N., Kollmorgen, S., Stoeckli, E., & Bachmann-Gagescu, R. (2024). Shared and unique consequences of Joubert Syndrome gene dysfunction on the zebrafish central nervous system Biology Open, 13, bio060421. https://doi.org/10.1242/bio.060421
    • Dumoulin, A., Wilson, N. H., Tucker, K. L., & Stoeckli, E. T. (2024). A cell-autonomous role for primary cilium-mediated signaling in long-range commissural axon guidance Development, 151, dev202788. https://doi.org/10.1242/dev.202788
    • Vladimirov, N., Voigt, F. F., Naert, T., Araujo, G. R., Cai, R., Reuss, A. M., Zhao, S., Schmid, P., Hildebrand, S., Schaettin, M., Groos, D., Mateos, J. M., Bethge, P., Yamamoto, T., Aerne, V., Roebroeck, A., Ertürk, A., Aguzzi, A., Ziegler, U., … Helmchen, F. (2024). Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples Nature Communications, 15, 2679. https://doi.org/10.1038/s41467-024-46770-2
    • Voigt, F. F., Reuss, A. M., Naert, T., Hildebrand, S., Schaettin, M., Hotz, A. L., Whitehead, L., Bahl, A., Neuhauss, S. C. F., Roebroeck, A., Stoeckli, E. T., Lienkamp, S. S., Aguzzi, A., & Helmchen, F. (2024). Reflective multi-immersion microscope objectives inspired by the Schmidt telescope Nature Biotechnology, 42, 65–71. https://doi.org/10.1038/s41587-023-01717-8

• 2023

  • Journal Article

    • Zuñiga, N. R., Dumoulin, A., Vaccaro, G., & Stoeckli, E. T. (2023). Cables1 links Slit/Robo and Wnt/Frizzled signaling in commissural axon guidance Development, 150, dev201671. https://doi.org/10.1242/dev.201671
    • Dumoulin, A., & Stoeckli, E. T. (2023). Looking for Guidance - Models and Methods to Study Axonal Navigation Neuroscience, 508, 30–39. https://doi.org/10.1016/j.neuroscience.2022.08.005

• 2022

  • Journal Article

    • Cordovado, A., Schaettin, M., Jeanne, M., et al, & Stoeckli, E. T. (2022). SEMA6B variants cause intellectual disability and alter dendritic spine density and axon guidance Human Molecular Genetics, 31, 3325–3340. https://doi.org/10.1093/hmg/ddac114
    • Baeriswyl, T., Schaettin, M., Leoni, S., Dumoulin, A., & Stoeckli, E. T. (2022). Endoglycan Regulates Purkinje Cell Migration by Balancing Cell-Cell Adhesion Frontiers in Neuroscience, 16, 894962. https://doi.org/10.3389/fnins.2022.894962
    • Vaccaro, G., Dumoulin, A., Zuñiga, N. R., Bandtlow, C. E., & Stoeckli, E. T. (2022). The Nogo-66 Receptors NgR1 and NgR3 Are Required for Commissural Axon Pathfinding Journal of Neuroscience, 42, 4087–4100. https://doi.org/10.1523/jneurosci.1390-21.2022
    • Dean, K. M., Chakraborty, T., Daetwyler, S., Lin, J., Garrelts, G., M’Saad, O., Mekbib, H. T., Voigt, F. F., Schaettin, M., Stoeckli, E. T., Helmchen, F., Bewersdorf, J., & Fiolka, R. (2022). Isotropic imaging across spatial scales with axially swept light-sheet microscopy Nature Protocols, 17, 2025–2053. https://doi.org/10.1038/s41596-022-00706-6

• 2021

  • Journal Article

    • Dumoulin, A., Zuñiga, N. R., & Stoeckli, E. T. (2021). Axon guidance at the spinal cord midline-A live imaging perspective Journal of Comparative Neurology, 529, 2517–2538. https://doi.org/10.1002/cne.25107
    • Yusifov, E., Dumoulin, A., & Stoeckli, E. T. (2021). Investigating Primary Cilia during Peripheral Nervous System Formation International Journal of Molecular Sciences, 22, 3176. https://doi.org/10.3390/ijms22063176
    • Baeriswyl, T., Dumoulin, A., Schaettin, M., Tsapara, G., Niederkofler, V., Helbling, D., Avilés, E., Frei, J. A., Wilson, N. H., Gesemann, M., Kunz, B., & Stoeckli, E. T. (2021). Endoglycan plays a role in axon guidance by modulating cell adhesion ELife, 10, e64767. https://doi.org/10.7554/eLife.64767

• 2020

  • Book Section

    • Tsapara, G., Andermatt, I., & Stoeckli, E. T. (2020). Gene Silencing in Chicken Brain Development In S. G. Sprecher (Ed.), Brain Development (No. 2047; pp. 439–456). Springer. https://doi.org/10.1007/978-1-4939-9732-9_25

• 2019

  • Journal Article

    • Núñez-León, D., Aguirre-Fernández, G., Steiner, A., Nagashima, H., Jensen, P., Stoeckli, E., Schneider, R. A., & Sánchez-Villagra, M. R. (2019). Morphological diversity of integumentary traits in fowl domestication: Insights from disparity analysis and embryonic development Developmental Dynamics, 248, 1044–1058. https://doi.org/10.1002/dvdy.105
    • Voigt, F. F., Kirschenbaum, D., Platonova, E., Pagès, S., Campbell, R. A. A., Kastli, R., Schaettin, M., Egolf, L., van der Bourg, A., Bethge, P., Haenraets, K., Frézel, N., Topilko, T., Perin, P., Hillier, D., Hildebrand, S., Schueth, A., Roebroeck, A., Roska, B., … Helmchen, F. (2019). The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue Nature Methods, 16, 1105–1108. https://doi.org/10.1038/s41592-019-0554-0

• 2018

  • Journal Article

    • Stoeckli, E. T. (2018). Understanding axon guidance: are we nearly there yet? Development, 145, dev151415. https://doi.org/10.1242/dev.151415
    • Ros, O., Barrecheguren, P. J., Cotrufo, T., Schaettin, M., Roselló-Busquets, C., Vílchez-Acosta, A., Hernaiz-Llorens, M., Martínez-Marmol, R., Ulloa, F., Stoeckli, E. T., Araújo, S. J., & Soriano, E. (2018). A conserved role for Syntaxin-1 in pre- and post-commissural midline axonal guidance in fly, chick, and mouse PLoS Genetics, 14, e1007432. https://doi.org/10.1371/journal.pgen.1007432
    • Asadollahi, R., Strauss, J. E., Zenker, M., Beuing, O., Edvardson, S., Elpeleg, O., Strom, T. M., Joset, P., Niedrist, D., Otte, C., Oneda, B., Boonsawat, P., Azzarello-Burri, S., Bartholdi, D., Papik, M., Zweier, M., Haas, C., Ekici, A. B., Baumer, A., … Rauch, A. (2018). Clinical and experimental evidence suggest a link between KIF7 and C5orf42-related ciliopathies through Sonic Hedgehog signaling European Journal of Human Genetics, 26, 197–209. https://doi.org/10.1038/s41431-017-0019-9

• 2017

  • Journal Article

    • Himmels, P., Paredes, I., Adler, H., Karakatsani, A., Luck, R., Marti, H. H., Ermakova, O., Rempel, E., Stoeckli, E. T., & Ruiz de Almodóvar, C. (2017). Motor neurons control blood vessel patterning in the developing spinal cord Nature Communications, 8, 14583. https://doi.org/10.1038/ncomms14583
    • Stoeckli, E. (2017). Where does axon guidance lead us? F1000Research, 6, 78. https://doi.org/10.12688/f1000research.10126.1
    • Barrecheguren, P. J., Ros, O., Cotrufo, T., Kunz, B., Soriano, E., Ulloa, F., Stoeckli, E. T., & Araújo, S. J. (2017). SNARE proteins play a role in motor axon guidance in vertebrates and invertebrates Developmental Neurobiology, 77, 963–974. https://doi.org/10.1002/dneu.22481
    • Frei, J. A., & Stoeckli, E. T. (2017). SynCAMs - From axon guidance to neurodevelopmental disorders Molecular and Cellular Neurosciences, 81, 41–48. https://doi.org/10.1016/j.mcn.2016.08.012
    • de Ramon Francàs, G., Alther, T., & Stoeckli, E. T. (2017). Calsyntenins are expressed in a dynamic and partially overlapping manner during neural development Frontiers in Neuroanatomy, 11, 76. https://doi.org/10.3389/fnana.2017.00076
    • de Ramon Francàs, G., Zuñiga, N. R., & Stoeckli, E. T. (2017). The spinal cord shows the way - How axons navigate intermediate targets Developmental Biology, 432, 43–52. https://doi.org/10.1016/j.ydbio.2016.12.002

• 2016

  • Journal Article

    • Alther, T. A., Domanitskaya, E., & Stoeckli, E. T. (2016). Calsyntenin 1-mediated trafficking of axon guidance receptors regulates the switch in axonal responsiveness at a choice point Development, 143, 994–1004. https://doi.org/10.1242/dev.127449
    • Ochsenbein, A. M., Karaman, S., Proulx, S. T., Berchtold, M., Jurisic, G., Stoeckli, E. T., & Detmar, M. (2016). Endothelial cell-derived semaphorin 3A inhibits filopodia formation by blood vascular tip cells Development, 143, 589–594. https://doi.org/10.1242/dev.127670
    • Avilés, E. C., & Stoeckli, E. T. (2016). Canonical wnt signaling is required for commissural axon guidance Developmental Neurobiology, 76, 190–208. https://doi.org/10.1002/dneu.22307

• 2014

  • Journal Article

    • Frei, J. A., Andermatt, I., Gesemann, M., & Stoeckli, E. T. (2014). The SynCAM synaptic cell adhesion molecules are involved in sensory axon pathfinding by regulating axon-axon contacts Journal of Cell Science, 127, 5288–5302. https://doi.org/10.1242/jcs.157032
    • Stoeckli, E. T. (2014). Wiring mechanisms for olfaction and vision--not completely different after all Neuron, 84, 655–657. https://doi.org/10.1016/j.neuron.2014.11.002
    • Frei, J. A., & Stoeckli, E. T. (2014). SynCAMs extend their functions beyond the synapse European Journal of Neuroscience, 39, 1752–1760. https://doi.org/10.1111/ejn.12544
    • Andermatt, I., Wilson, N., & Stoeckli, E. T. (2014). In ovo electroporation of miRNA-based-plasmids to investigate gene function in the developing neural tube Methods in Molecular Biology, 1101, 353–368. https://doi.org/10.1007/978-1-62703-721-1_17
    • Andermatt, I., & Stoeckli, E. T. (2014). RNAi-based gene silencing in chicken brain development Methods in Molecular Biology, 1082, 253–266. https://doi.org/10.1007/978-1-62703-655-9_17
    • Andermatt, I., Wilson, N. H., Bergmann, T., Mauti, O., Gesemann, M., Sockanathan, S., & Stoeckli, E. T. (2014). Semaphorin 6B acts as a receptor in post-crossing commissural axon guidance Development, 141, 3709–3720. https://doi.org/10.1242/dev.112185
    • Stoeckli, E. T. (2014). Protocadherins: not just neuron glue, more too! Developmental Cell, 30, 643–644. https://doi.org/10.1016/j.devcel.2014.09.008

• 2013

  • Journal Article

    • Stoeckli, E. T., Kilinc, D., Kunz, B., Kunz, S., Lee, G. U., Martines, E., Rader, C., & Suter, D. (2013). Analysis of cell-cell contact mediated by Ig superfamily cell adhesion molecules Current Protocols in Cell Biology, 61, 9.5.1-9.5.85. https://doi.org/10.1002/0471143030.cb0905s61
    • Wilson, N. H., & Stoeckli, E. T. (2013). Sonic hedgehog regulates its own receptor on postcrossing commissural axons in a glypican1-dependent manner Neuron, 79, 478–491. https://doi.org/10.1016/j.neuron.2013.05.025
    • Avilés, E. C., Wilson, N. H., & Stoeckli, E. T. (2013). Sonic hedgehog and Wnt: antagonists in morphogenesis but collaborators in axon guidance Frontiers in Cellular Neuroscience, 7:86. https://doi.org/10.3389/fncel.2013.00086

• 2012

  • Journal Article

    • Philipp, M., Niederkofler, V., Debrunner, M., Alther, T., Kunz, B., & Stoeckli, E. T. (2012). RabGDI controls axonal midline crossing by regulating Robo1 surface expression Neural Development, 7, 36. https://doi.org/10.1186/1749-8104-7-36
    • Wilson, N. H., & Stoeckli, E. T. (2012). In ovo electroporation of miRNA-based plasmids in the developing neural tube and assessment of phenotypes by DiI injection in open-book preparations Journal of Visualized Experiments, e4384. https://doi.org/10.3791/4384
    • Wilson, N. H., & Stoeckli, E. T. (2012). Sonic Hedgehog regulates Wnt activity during neural circuit formation Vitamins and Hormones, 88, 173–209. https://doi.org/10.1016/B978-0-12-394622-5.00008-0
    • Stoeckli, E. T. (2012). What does the developing brain tell us about neural diseases? European Journal of Neuroscience, 35, 1811–1817. https://doi.org/10.1111/j.1460-9568.2012.08171.x

  • Edited Scientific Work

    • Neuromedia. Art and Neuroscience Research (2012). In J. Scott & E. Stoeckli (Eds.), Neuromedia. Springer. https://doi.org/10.1007/978-3-642-30322-7

• 2011

  • Journal Article

    • Wilson, N. H., & Stoeckli, E. T. (2011). Cell type specific, traceable gene silencing for functional gene analysis during vertebrate neural development. Nucleic Acids Research, 39, e133. https://doi.org/10.1093/nar/gkr628
    • Dutt, S., Cassoly, E., Dours-Zimmermann, M. T., Matasci, M., Stoeckli, E. T., & Zimmermann, D. R. (2011). Versican v0 and v1 direct the growth of peripheral axons in the developing chick hindlimb Journal of Neuroscience, 31, 5262–5270. https://doi.org/10.1523/JNEUROSCI.4897-10.2011
    • Bacon, C., Endris, V., Andermatt, I., Niederkofler, V., Waltereit, R., Bartsch, D., Stoeckli, E. T., & Rappold, G. (2011). Evidence for a role of srGAP3 in the positioning of commissural axons within the ventrolateral funiculus of the mouse spinal cord PLoS ONE, 6, e19887. https://doi.org/10.1371/journal.pone.0019887
    • Cotrufo, T., Pérez-Brangulí, F., Muhaisen, A., Ros, O., Andrés, R., Baeriswyl, T., Fuschini, G., Tarrago, T., Pascual, M., Ureña, J., Blasi, J., Giralt, E., Stoeckli, E. T., & Soriano, E. (2011). A signaling mechanism coupling netrin-1/deleted in colorectal cancer chemoattraction to SNARE-mediated exocytosis in axonal growth cones Journal of Neuroscience, 31, 14463–14480. https://doi.org/10.1523/JNEUROSCI.3018-11.2011
    • Joset, P., Wacker, A., Babey, R., Ingold, E. A., Andermatt, I., Stoeckli, E. T., & Gesemann, M. (2011). Rostral growth of commissural axons requires the cell adhesion molecule MDGA2 Neural Development, 6, 22. https://doi.org/10.1186/1749-8104-6-22

• 2010

  • Journal Article

    • Holz, A., Kollmus, H., Ryge, J., Niederkofler, V., Dias, J., Ericson, J., Stoeckli, E. T., Kiehn, O., & Arnold, H.-H. (2010). The transcription factors Nkx2.2 and Nkx2.9 play a novel role in floor plate development and commissural axon guidance Development, 137, 4249–4260. https://doi.org/10.1242/dev.053819

Pagination