Publications

ZORA Publication List

Publications

2024
- Journal Article
  - Voigt, Fabian F; Reuss, Anna Maria; Naert, Thomas; Hildebrand, Sven; Schaettin, Martina; Hotz, Adriana L; Whitehead, Lachlan; Bahl, Armin; Neuhauss, Stephan C F; Roebroeck, Alard; Stoeckli, Esther T; Lienkamp, Soeren S; Aguzzi, Adriano; Helmchen, Fritjof (2024). Reflective multi-immersion microscope objectives inspired by the Schmidt telescope. Nature Biotechnology, 42(1):65-71.
2023
- Journal Article
  - Zuñiga, Nikole R; Dumoulin, Alexandre; Vaccaro, Giuseppe; Stoeckli, Esther T (2023). Cables1 links Slit/Robo and Wnt/Frizzled signaling in commissural axon guidance. Development, 150(19):dev201671.
  - Dumoulin, Alexandre; Stoeckli, Esther T (2023). Looking for Guidance - Models and Methods to Study Axonal Navigation. Neuroscience, 508:30-39.
- Working Paper
  - Vladimirov, Nikita; Voigt, Fabian F; Naert, Thomas; Araujo, Gabriela R; Cai, Ruiyao; Reuss, Anna Maria; Zhao, Shan; Schmid, Patricia; Hildebrand, Sven; Schaettin, Martina; Groos, Dominik; Mateos, José María; Bethge, Philipp; Yamamoto, Taiyo; Aerne, Valentino; Roebroeck, Alard; Ertürk, Ali; Aguzzi, Adriano; Ziegler, Urs; Stoeckli, Esther; Baudis, Laura; Lienkamp, Soeren S; Helmchen, Fritjof (2023). The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples. bioRxiv 2023.06.16, University of Zurich.
2022
- Journal Article
  - Cordovado, Amélie; Schaettin, Martina; Jeanne, Médéric; et al; Stoeckli, Esther T (2022). SEMA6B variants cause intellectual disability and alter dendritic spine density and axon guidance. Human Molecular Genetics, 31(19):3325-3340.
  - Dean, Kevin M; Chakraborty, Tonmoy; Daetwyler, Stephan; Lin, Jinlong; Garrelts, Gerard; M'Saad, Ons; Mekbib, Hannahmariam T; Voigt, Fabian F; Schaettin, Martina; Stoeckli, Esther T; Helmchen, Fritjof; Bewersdorf, Joerg; Fiolka, Reto (2022). Isotropic imaging across spatial scales with axially swept light-sheet microscopy. Nature Protocols, 17(9):2025-2053.
  - Baeriswyl, Thomas; Schaettin, Martina; Leoni, Simone; Dumoulin, Alexandre; Stoeckli, Esther T (2022). Endoglycan Regulates Purkinje Cell Migration by Balancing Cell-Cell Adhesion. Frontiers in Neuroscience, 16:894962.
  - Vaccaro, Giuseppe; Dumoulin, Alexandre; Zuñiga, Nikole R; Bandtlow, Christine E; Stoeckli, Esther T (2022). The Nogo-66 Receptors NgR1 and NgR3 Are Required for Commissural Axon Pathfinding. Journal of Neuroscience, 42(20):4087-4100.
2021
- Journal Article
  - Dumoulin, Alexandre; Zuñiga, Nikole R; Stoeckli, Esther T (2021). Axon guidance at the spinal cord midline-A live imaging perspective. Journal of Comparative Neurology, 529(10):2517-2538.
  - Yusifov, Elkhan; Dumoulin, Alexandre; Stoeckli, Esther T (2021). Investigating Primary Cilia during Peripheral Nervous System Formation. International Journal of Molecular Sciences, 22(6):3176.
  - Baeriswyl, Thomas; Dumoulin, Alexandre; Schaettin, Martina; Tsapara, Georgia; Niederkofler, Vera; Helbling, Denise; Avilés, Evelyn; Frei, Jeannine A; Wilson, Nicole H; Gesemann, Matthias; Kunz, Beat; Stoeckli, Esther T (2021). Endoglycan plays a role in axon guidance by modulating cell adhesion. eLife, 10:e64767.
2020
- Book Section
  - Tsapara, Georgia; Andermatt, Irwin; Stoeckli, Esther T (2020). Gene Silencing in Chicken Brain Development. In: Sprecher, Simon G. Brain Development. Humana, New York, NY: Springer, 439-456.
2019
- Journal Article
  - Núñez-León, Daniel; Aguirre-Fernández, Gabriel; Steiner, Andrea; Nagashima, Hiroshi; Jensen, Per; Stoeckli, Esther; Schneider, Richard A; Sánchez-Villagra, Marcelo R (2019). Morphological diversity of integumentary traits in fowl domestication: Insights from disparity analysis and embryonic development. Developmental Dynamics, 248(11):1044-1058.
  - Voigt, Fabian F; Kirschenbaum, Daniel; Platonova, Evgenia; Pagès, Stéphane; Campbell, Robert A A; Kastli, Rahel; Schaettin, Martina; Egolf, Ladan; van der Bourg, Alexander; Bethge, Philipp; Haenraets, Karen; Frézel, Noémie; Topilko, Thomas; Perin, Paola; Hillier, Daniel; Hildebrand, Sven; Schueth, Anna; Roebroeck, Alard; Roska, Botond; Stoeckli, Esther T; Pizzala, Roberto; Renier, Nicolas; Zeilhofer, Hanns Ulrich; Karayannis, Theofanis; Ziegler, Urs; Batti, Laura; Holtmaat, Anthony; Lüscher, Christian; Aguzzi, Adriano; Helmchen, Fritjof (2019). The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue. Nature Methods, 16(11):1105-1108.
2018
- Journal Article
  - Ros, Oriol; Barrecheguren, Pablo José; Cotrufo, Tiziana; Schaettin, Martina; Roselló-Busquets, Cristina; Vílchez-Acosta, Alba; Hernaiz-Llorens, Marc; Martínez-Marmol, Ramón; Ulloa, Fausto; Stoeckli, Esther T; Araújo, Sofia J; Soriano, Eduardo (2018). A conserved role for Syntaxin-1 in pre- and post-commissural midline axonal guidance in fly, chick, and mouse. PLoS Genetics, 14(6):e1007432.
  - Stoeckli, Esther T (2018). Understanding axon guidance: are we nearly there yet?. Development, 145(10):dev151415.
  - Asadollahi, Reza; Strauss, Justin E; Zenker, Martin; Beuing, Oliver; Edvardson, Simon; Elpeleg, Orly; Strom, Tim M; Joset, Pascal; Niedrist, Dunja; Otte, Christine; Oneda, Beatrice; Boonsawat, Paranchai; Azzarello-Burri, Silvia; Bartholdi, Deborah; Papik, Michael; Zweier, Markus; Haas, Cordula; Ekici, Arif B; Baumer, Alessandra; Boltshauser, Eugen; Steindl, Katharina; Nothnagel, Michael; Schinzel, Albert; Stoeckli, Esther T; Rauch, Anita (2018). Clinical and experimental evidence suggest a link between KIF7 and C5orf42-related ciliopathies through Sonic Hedgehog signaling. European Journal of Human Genetics, 26(2):197-209.
2017
- Journal Article
  - Himmels, Patricia; Paredes, Isidora; Adler, Heike; Karakatsani, Andromachi; Luck, Robert; Marti, Hugo H; Ermakova, Olga; Rempel, Eugen; Stoeckli, Esther T; Ruiz de Almodóvar, Carmen (2017). Motor neurons control blood vessel patterning in the developing spinal cord. Nature Communications, 8:14583.
  - Stoeckli, Esther (2017). Where does axon guidance lead us?. F1000Research, 6:78.
  - de Ramon Francàs, Gemma; Alther, Tobias; Stoeckli, Esther T (2017). Calsyntenins are expressed in a dynamic and partially overlapping manner during neural development. Frontiers in Neuroanatomy, 11:76.
  - Barrecheguren, Pablo José; Ros, Oriol; Cotrufo, Tiziana; Kunz, Beat; Soriano, Eduardo; Ulloa, Fausto; Stoeckli, Esther T; Araújo, Sofia J (2017). SNARE proteins play a role in motor axon guidance in vertebrates and invertebrates. Developmental Neurobiology, 77(8):963-974.
  - de Ramon Francàs, Gemma; Zuñiga, Nikole R; Stoeckli, Esther T (2017). The spinal cord shows the way - How axons navigate intermediate targets. Developmental Biology, 432(1):43-52.
  - Frei, Jeannine A; Stoeckli, Esther T (2017). SynCAMs - From axon guidance to neurodevelopmental disorders. Molecular and Cellular Neurosciences, 81:41-48.
2016
- Journal Article
  - Alther, Tobias A; Domanitskaya, Elena; Stoeckli, Esther T (2016). Calsyntenin 1-mediated trafficking of axon guidance receptors regulates the switch in axonal responsiveness at a choice point. Development, 143(6):994-1004.
  - Ochsenbein, Alexandra M; Karaman, Sinem; Proulx, Steven T; Berchtold, Michaela; Jurisic, Giorgia; Stoeckli, Esther T; Detmar, Michael (2016). Endothelial cell-derived semaphorin 3A inhibits filopodia formation by blood vascular tip cells. Development, 143(4):589-594.
  - Avilés, Evelyn C; Stoeckli, Esther T (2016). Canonical wnt signaling is required for commissural axon guidance. Developmental Neurobiology, 76(2):190-208.
2014
- Journal Article
  - Frei, Jeannine A; Andermatt, Irwin; Gesemann, Matthias; Stoeckli, Esther T (2014). The SynCAM synaptic cell adhesion molecules are involved in sensory axon pathfinding by regulating axon-axon contacts. Journal of Cell Science, 127(24):5288-5302.
  - Stoeckli, Esther T (2014). Wiring mechanisms for olfaction and vision--not completely different after all. Neuron, 84(4):655-657.
  - Frei, Jeannine A; Stoeckli, Esther T (2014). SynCAMs extend their functions beyond the synapse. European Journal of Neuroscience, 39(11):1752-1760.
  - Stoeckli, Esther T (2014). Protocadherins: not just neuron glue, more too!. Developmental Cell, 30(6):643-644.
  - Andermatt, Irwin; Wilson, Nicole H; Bergmann, Timothy; Mauti, Olivier; Gesemann, Matthias; Sockanathan, Shanthini; Stoeckli, Esther T (2014). Semaphorin 6B acts as a receptor in post-crossing commissural axon guidance. Development, 141(19):3709-3720.
  - Andermatt, Irwin; Stoeckli, Esther T (2014). RNAi-based gene silencing in chicken brain development. Methods in Molecular Biology, 1082:253-266.
  - Andermatt, Irwin; Wilson, Nicole; Stoeckli, Esther T (2014). In ovo electroporation of miRNA-based-plasmids to investigate gene function in the developing neural tube. Methods in Molecular Biology, 1101:353-368.
2013
- Journal Article
  - Stoeckli, Esther T; Kilinc, Devrim; Kunz, Beat; Kunz, Stefan; Lee, Gil U; Martines, Elena; Rader, Christoph; Suter, Daniel (2013). Analysis of cell-cell contact mediated by Ig superfamily cell adhesion molecules. Current Protocols in Cell Biology, 61:9.5.1-9.5.85.
  - Wilson, Nicole H; Stoeckli, Esther T (2013). Sonic hedgehog regulates its own receptor on postcrossing commissural axons in a glypican1-dependent manner. Neuron, 79(3):478-491.
  - Avilés, Evelyn C; Wilson, Nicole H; Stoeckli, Esther T (2013). Sonic hedgehog and Wnt: antagonists in morphogenesis but collaborators in axon guidance. Frontiers in Cellular Neuroscience:7:86.
2012
- Journal Article
  - Philipp, Melanie; Niederkofler, Vera; Debrunner, Marc; Alther, Tobias; Kunz, Beat; Stoeckli, Esther T (2012). RabGDI controls axonal midline crossing by regulating Robo1 surface expression. Neural Development, 7:36.
  - Wilson, Nicole H; Stoeckli, Esther T (2012). In ovo electroporation of miRNA-based plasmids in the developing neural tube and assessment of phenotypes by DiI injection in open-book preparations. Journal of Visualized Experiments, (68):e4384.
  - Wilson, Nicole H; Stoeckli, Esther T (2012). Sonic Hedgehog regulates Wnt activity during neural circuit formation. Vitamins and Hormones, 88:173-209.
  - Stoeckli, Esther T (2012). What does the developing brain tell us about neural diseases?. European Journal of Neuroscience, 35(12):1811-1817.
- Edited Scientific Work
  - Edited by: Scott, Jill; Stoeckli, Esther (2012). Heidelberg [etc.]: Springer. Neuromedia. Art and Neuroscience Research.
2011
- Journal Article
  - Wilson, N H; Stoeckli, E T (2011). Cell type specific, traceable gene silencing for functional gene analysis during vertebrate neural development.. Nucleic Acids Research, 39(20):e133.
  - Joset, P; Wacker, A; Babey, R; Ingold, E A; Andermatt, I; Stoeckli, E T; Gesemann, M (2011). Rostral growth of commissural axons requires the cell adhesion molecule MDGA2. Neural Development, 6:22.
  - Bacon, C; Endris, V; Andermatt, I; Niederkofler, V; Waltereit, R; Bartsch, D; Stoeckli, E T; Rappold, G (2011). Evidence for a role of srGAP3 in the positioning of commissural axons within the ventrolateral funiculus of the mouse spinal cord. PLoS ONE, 6(5):e19887.
  - Cotrufo, T; Pérez-Brangulí, F; Muhaisen, A; Ros, O; Andrés, R; Baeriswyl, T; Fuschini, G; Tarrago, T; Pascual, M; Ureña, J; Blasi, J; Giralt, E; Stoeckli, E T; Soriano, E (2011). A signaling mechanism coupling netrin-1/deleted in colorectal cancer chemoattraction to SNARE-mediated exocytosis in axonal growth cones. Journal of Neuroscience, 31(41):14463-14480.
  - Dutt, S; Cassoly, E; Dours-Zimmermann, M T; Matasci, M; Stoeckli, E T; Zimmermann, D R (2011). Versican v0 and v1 direct the growth of peripheral axons in the developing chick hindlimb. Journal of Neuroscience, 31(14):5262-5270.
2010
- Journal Article
  - Holz, Andreas; Kollmus, Heike; Ryge, Jesper; Niederkofler, Vera; Dias, Jose; Ericson, Johan; Stoeckli, Esther T; Kiehn, Ole; Arnold, Hans-Henning (2010). The transcription factors Nkx2.2 and Nkx2.9 play a novel role in floor plate development and commissural axon guidance. Development, 137(24):4249-4260.
  - Stoeckli, E T (2010). Neural circuit formation in the cerebellum is controlled by cell adhesion molecules of the contactin family. Cell Adhesion and Migration, 4(4):523-526.
  - Petrinovic, M M; Duncan, C S; Bourikas, D; Weinman, O; Montani, L; Schroeter, A; Maerki, D; Sommer, L; Stoeckli, E T; Schwab, M E (2010). Neuronal Nogo-A regulates neurite fasciculation, branching and extension in the developing nervous system. Development, 137(15):2539-2550.
  - Penno, A; Reilly, M M; Houlden, H; Laurá, M; Rentsch, K; Niederkofler, V; Stoeckli, E T; Nicholson, G; Eichler, F; Brown, R H; von Eckardstein, Arnold; Hornemann, T (2010). Hereditary sensory neuropathy type 1 is caused by the accumulation of two neurotoxic sphingolipids. Journal of Biological Chemistry, 285(15):11178-11187.

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